Multi-species paired single-cell resource
Multiome Atlas
Explore RNA expression and chromatin accessibility measured in the same cells across animals and plants.
Resource overview
A common portal for independently analyzed multiome libraries
Each entry keeps RNA, ATAC and weighted-nearest-neighbor embeddings within its original library. Curated cluster labels, evidence status, marker support and retained-cell downloads stay linked to exact paired-cell identities.
- Same-cell RNA and ATAC barcodes
- RNA, ATAC and WNN UMAP views
- Conservative evidence-qualified annotations
- Parquet tables for retained cells and markers
Species coverage
Cells in the current release
Real release data
Representative WNN embeddings
Examples are rendered from retained cells in the current multi-species release.
Evidence-aware by design
Annotation confidence stays visible
Supported, broad, provisional and unresolved labels remain separate. Candidate identities are presented as hypotheses, not converted into confirmed cell types.
Annotation policy